Machine Learning Engineer – Biological Foundation Models

Machine Learning Engineer – Biological Foundation Models

Metric Bio has partnered with a venture-backed biotech at the intersection of AI and cell biology. This team is building foundation models on trillion-token scale biological datasets to reimagine how we create cell therapies.

This is a role for someone who doesn’t just apply existing methods but creates new ones; first-author researchers, system builders, and innovators who want their work to drive real therapeutic impact.

Responsibilities:

Design and optimize foundation models for single-cell and multi-omics data, leveraging transformer and generative architectures. Build scalable distributed pipelines (multi-GPU training, trillion-token inference) to push biology into true foundation-scale. Collaborate closely with computational biologists and wet-lab teams , ensuring models produce interpretable, biologically meaningful outputs. Prototype and deploy novel architectures tailored to biological data, with the freedom to shape strategy and direction.

Requirements:

First-author publications in top-tier ML/biology journals. 6+ years of experience in ML, deep learning, or foundation models (academic or industry). Proven expertise with transformers, diffusion, or generative models . Strong Python + PyTorch/TensorFlow engineering skills; ability to move from research prototype → production. Background in single-cell or omics data is ideal, but ML-first innovators who can quickly learn the biology are very welcome . Track record of innovation: new methods, impactful papers, or deployed ML systems.

What We Offer:

Technical leadership opportunity at a mission-driven company that has recently secured over $50M in funding . Work alongside top talent at the cutting edge of AI x biology . Chance to impact millions of lives by redefining how cell therapies are developed . Competitive compensation and benefits, with an emphasis on urgency, collaboration, and innovation.

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